Nicolas Clauvelin
2018
Localizing Analytics for Speed, Reliability and Reduced Power Consumption
J. Milios and N. Clauvelin
Embedded World Conference 2018, 2018
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2017
Nucleosome-free DNA regions differentially affect distant communication in chromatin
E. V. Nizovtseva, N. Clauvelin, S. Todolli, Y. S. Polikanov, O. I. Kulaeva, S. Wengrzynek, W. K. Olson and V. M. Studitsky
Nucleic Acids Research, pp 3059–3067, 2017
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Contributions of Sequence to the Higher-Order Structures of DNA
S. Todolli, P. J. Perez, N. Clauvelin and W. K. Olson
Biophysical Journal, pp 416–426, 2017
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Parallels between DNA and collagen – comparing elastic models of the double and triple helix
F. Xu, H. Zheng, N. Clauvelin, X.-J. Lu, W. K. Olson and V. Nanda
Scientific Reports, 7, pp 12802, 2017
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2016
A High-Performance Model Solver for in-The-Loop Battery Simulations
R. Melville, N. Clauvelin and J. Milios
2016 American Control Conference (ACC), pp 3119–3125, 2016
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2014
What Controls DNA Looping?
P. J. Perez, N. Clauvelin, M. A. Grosner, A. V. Colasanti and W. K. Olson
International Journal of Molecular Sciences, 15(9), pp 15090–15108, 2014
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Nucleosome positioning and composition modulate in silico chromatin flexibility
N. Clauvelin, P. Lo, O. I. Kulaeva, E. V. Nizovtseva, J. Diaz-Montes, J. Zola, M. Parashar, V. M. Studitsky and W. K. Olson
Journal of Physics: Condensed Matter, pp 064112, 2014
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The synergy between protein positioning and DNA elasticity: energy minimization of protein-decorated DNA minicircles
N. Clauvelin and W. K. Olson
arXiv, 2014
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2013
A discrete geometric approach for simulating the dynamics of thin viscous threads
B. Audoly, N. Clauvelin, P.-T. Brun, M. Bergou, E. Grinspun and M. Wardetzky
Journal of Computational Physics, 253, pp 18–49, 2013
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Weak operator binding enhances simulated lac repressor-mediated DNA looping
A. V. Colasanti, M. A. Grosner, P. J. Perez, N. Clauvelin, X.-J. Lu and W. K. Olson
Biopolymers, 99(12), pp 1070–1081, 2013
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Effect of the Boundary Conditions and Influence of the Rotational Inertia on the Vibrational Modes of an Elastic Ring
N. Clauvelin, W. K. Olson and I. Tobias
Journal of Elasticity, 115(2), pp 193–224, 2013
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2012
Internucleosomal Interactions Mediated by Histone Tails Allow Distant Communication in Chromatin
O. I. Kulaeva, G. Zheng, Y. S. Polikanov, A. V. Colasanti, N. Clauvelin, S. Mukhopadhyay, A. M. Sengupta, V. M. Studitsky and W. K. Olson
Journal of Biological Chemistry, 287(24), pp 20248–20257, 2012
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Insights into gene expression and packaging from computer simulations
W. K. Olson, N. Clauvelin, A. V. Colasanti, G. Singh and G. Zheng
Biophysical Reviews, 4(3), pp 171–178, 2012
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Characterization of the Geometry and Topology of DNA Pictured As a Discrete Collection of Atoms
N. Clauvelin, W. K. Olson and I. Tobias
Journal of Chemical Theory and Computation, 8(3), pp 1092–1107, 2012
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2009
Elasticity and Electrostatics of Plectonemic DNA
N. Clauvelin, B. Audoly and S. Neukirch
Biophysical Journal, 96(9), pp 3716–3723, 2009
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Matched Asymptotic Expansions for Twisted Elastic Rods: A Self-Contact Problem With Non-Trivial Contact Topology
N. Clauvelin, B. Audoly and S. Neukirch
Journal of the Mechanics and Physics of Solids, 57(9), pp 1623–1656, 2009
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2008
Mechanical Response of Plectonemic DNA: An Analytical Solution
N. Clauvelin, B. Audoly and S. Neukirch
Macromolecules, 41, pp 4479–4483, 2008
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2007
Analytical Results for the Plectonemic Response of Supercoiled DNA
N. Clauvelin, B. Audoly and S. Neukirch
Journal of Computer-Aided Materials Design, 14, pp 94–101, 2007
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Elastic Knots
B. Audoly, N. Clauvelin and S. Neukirch
Physical Review Letters, 99(16), pp 164301, 2007
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